Showing posts with label coral reefs. Show all posts
Showing posts with label coral reefs. Show all posts

Wednesday, May 3, 2017

Outreach & Education in St. Croix

Students from St. Croix 7th Day Adventist School pose in front of the Nancy Foster in Frederiksted, St. Croix

One of our favorite parts of our annual surveys is being able to pull into port and welcome local students on board for a small glimpse into what we do at sea. We know this can be inspirational for many young people who may be interested in pursuing a marine science career, and we greatly value these events during our port visits. It isn't often your school field trip takes you on board a NOAA research vessel!

This year, we pulled into St. Croix, the southernmost of the U.S. Virgin Islands. We welcomed two groups on board, and, with the help of the Nancy Foster's NOAA Corps officers, shared what life and research is like at sea.

Students from the AZ Academy try their hand at sorting plankton under the microscope in the ship's wet lab
We were first visited by an all-female group of students from the AZ Academy, who are part of a community transfer project entitled "Diving for Debris," part of the "Pride in Our Seas, Pride in Ourselves" project at the University of the Virgin Islands, and funded by the NOAA Marine Debris Program. Two-thirds of our own science team was comprised of women - we truly value supporting young women who have an interest in science. These ladies have bright futures ahead of them! 

Students from the AZ Academy work together to match larval fish photos with their adult counterparts




Students from St. Croix 7th Day Adventist School check out plankton under the microscope
Our second group of students joined us from the St. Croix 7th Day Adventist School in Christiansted, who work with the outreach and education specialists at the VI-EPSCoR program. 22 students and 3 teachers toured the ship, visited the wet lab, and examined larval fish and plankton samples under the microscope. These middle and high school students were high-energy, and some wanted to stay on the ship and sail with us!

ENS Keith Hanson shows students from St. Croix 7th Day Adventist School the steering controls on the bridge

Wednesday, April 26, 2017

Featured Scientist: Meet Kristen!

Our annual surveys would not be possible without our wonderful collaborators from around the world. We'll dedicate several future blog posts to highlight these individuals, so that you can learn more about them, their research, and the valuable contributions they make to the survey. You can find previous posts here. Today we feature Kristen Ewen from the University of the Virgin Islands!

My name is Kristen Ewen, and I'm a first year Masters Student at the University of the Virgin Islands!
Kristen deploys a biodegradable drifter

My thesis project looks to model population connectivity of large bodied parrotfish of the genus Scarus within the USVI. The reason why we are focused on parrotfish is because they are one of the largest herbivores on Caribbean reefs. They remove excess algae which allows for coral dominated reefs. These fish are also delicious! Which makes them a huge staple in the artisanal fisheries of the territory. However, their populations have declined recently, primarily due to overfishing, reducing their contribution to these ecosystem services.  To better manage this genus, computer models can be developed to take larval fish found in the water column and trace them back to where they were born.  These sites where these fish are reproducing can then be protected to increase the chance of repopulating the surrounding reefs.



Kristen communicates from inside the wet lab with the winch operator, the back deck, and the bridge during a net tow

Since I am using the larval fish data collected on this cruise, I wanted to come aboard to really understand the collection process rather then just reading about it.  From this experience aboard the Nancy Foster I now have the complete story. I may have come for the sampling methods, but stayed for the cute baby parrotfish!

Beast mode! Kristen flexes her muscles on the back deck

Tuesday, April 25, 2017

Featured Scientist: Meet Sennai!

Our annual surveys would not be possible without our wonderful collaborators from around the world. We'll dedicate several future blog posts to highlight these individuals, so that you can learn more about them, their research, and the valuable contributions they make to the survey. You can find previous posts here. Today we feature Sennai Habtes from the University of the Virgin Islands!

Sennai Habtes has been a longtime collaborator with the FORCES lab, since his days as a PhD student. We are always excited to get to sail with him each year! Sennai is a Research Assistant Professor of Biological Oceanography at the Center for Marine and Environmental Studies, University of the Virgin Islands.

"This year I am working with the scientists of the NOAA SEFSC, Dr. Dan Otis from the University of South Florida, and Dr. David Lindo from the City University of New York, to understand how physical oceanographic processes affect larval dispersal around spawning periods. We are particularly interested in two phenomena: where do grouper larvae go after they are spawned, and how the oceanographic conditions surrounding high biological productivity areas in the USVI and Puerto Rico have an impact. Myctoperca venenosa, or the Yellowfin Grouper, spawn approximately 8-10 days after the full moon from January until April, at spawning aggregations sites along the shelf surrounding the USVI (primarily along the Gramanik Bank, on the South Drop). Although we routinely sample for larval fish during the times of year when grouper are actively spawning around the USVI, we have very little luck catching these larvae. We believe this may because they target zones with particular currents that transport the larvae below the surface. During this cruise we are using specialized nets called a MOCNESS (Multiple Openning and Closing Net Environmental Sampling System) to sample the area surrounding the spawning aggregations. This will allow us to determine where in the water column these larvae are transported.

Grouper larva, ~5mm length
Photo credit: FORCES Lab
"Additionally, we are targeting Lang Bank on St. Croix, to determine how oceanographic conditions, which support a high biological region there, influence the transport of larval fish. Along with our traditional measurements of oceanographic conditions, and net sampling of zooplankton and ichthyoplankton (larval fish) we are also using satellite imagery to identify interesting features that may help in either transporting the larvae faster or retaining them in coastal areas surrounding the USVI. These are two smaller studies that we have implemented in this years cruise to help understand how the coastal oceanography around the USVI and PR affect larval recruitment (addition of new fish into adult populations) and connectivity (transport, ultimately allowing for better management of marine fish populations in the Eastern Caribbean."

Satellite image shows the oceanography of the US Virgin Islands, with tracks of the drifters deployed on NF-17-03.
Image courtesy of Dr. Dan Otis - Institute for Marine Remote Sensing USF-CMS

For more on Sennai’s research see his faculty webpage at UVI: http://www.uvi.edu/directory/profiles/staff/habtes-sennai-y.aspx
or this recent news post from the team at the VI-EPSCoR program about Sennai’s background and his research: https://www.viepscor.org/news/2017/4/12/drhabtes

Sunday, April 23, 2017

Featured Scientist: Meet Jess!

Our annual surveys would not be possible without our wonderful collaborators from around the world. We'll dedicate several future blog posts to highlight these individuals, so that you can learn more about them, their research, and the valuable contributions they make to the survey. You can find previous posts here. Today we feature Jess Scicchigno from CUNY College of Staten Island!

Jess poses with the CTD
Hi!  My name is Jessica Scicchigno and I'm going to take you on a bit of an academic wild ride.  I am currently going to graduate from the CUNY College of Staten Island in June 2017.  I am graduating with an English Bachelor of Arts and a Psychology Bachelor of Science with a minor in Geology.  So how  did an English major end up on a NOAA cruise? I'm glad you asked.

I met Professor David Lindo-Atichati in a meteorology class he was teaching at my college.  I would come into class beaming with excitement over earth science disciplines, a subject I have always been interested in. This excitement was noticed and Professor Lindo invited me on a NOAA research survey he was involved with.  I was always a huge NOAA fan and this was something I always wanted to do.  Naturally, I could not say no.  Now I am on my first oceanic cruise.

So what do I want to get out of this? I want to learn as much as possible about the instruments used to collect data.  Science is taken for granted - scientists on this ship literally work day and night.  We work in rough seas.  We work rain or shine.  We do also get sea sick!  I want to learn how to work the equipment and gain an appreciation for data collection.  You truly do not know how difficult it can be until you're doing it yourself. Simply seeing a piece of equipment in a picture can no longer do it justice after this experience.  

Ready to deploy the Bongo net -
hard hat, PFD, and tether? Check!
In addition to that, I want to know more about the Caribbean currents and how the ocean is "setup" in this region.  I want to know how the biology is influenced by this and what biology is here! Just from taking the samples with nets we have seen some amazing creatures. I want to learn, partly, the day to day life of creatures here.  When do they migrate? What do the other scientists here know about grouper migrations or spawn sites? What fish are common in what areas?  I have always loved fish, and being surrounded by people who love them just as much as I do is nothing short of amazing.  It's even more amazing to learn from them - both fish and people.

Although I have taken a very unusual path, the dreaming teenager in me could not help but tear up at the initial sight of the gorgeous Nancy Foster, sitting at the dock at 2 AM when I arrived.  This surreal atmosphere has led me back to the sciences, and I want to go deeper into oceanography for sure after this cruise.  I always wanted to do this - now I just want to do it again.

Jess models her survival "Gumby" suit during an Abandon Ship drill

Saturday, April 22, 2017

Coral Reef Fish in USVI: Where do they come from?

Figure showing the dominant flow modes a) cyclonic
 and b) anticyclonic flows around St. Croix
(Source: AMSEAS Model)
If you've ever been to the Caribbean, you've seen white sand beaches and clear blue waters - perfect for snorkeling and SCUBA diving to see the coral reef systems beneath the surface. These reefs demonstrate incredible diversity of fish, crustaceans, cephalopods, and many other organisms. As larval fish biologists and oceanographers, we are interested in where coral reef fish spawn, and the oceanographic processes that transport larvae to their ultimate settling location, the coral reefs.

Though the US Virgin Islands are relatively small, the oceanographic features surrounding them can be quite complex. The southern-most island, St. Croix, is geographically isolated 50km from the northern islands by a 4000m-deep trough, and we hypothesize
that its position affects how waters flow into and around the northern islands (St. Thomas and St. John).

We devised a sampling plan which should help us understand the flow near the shelf break south of St. Thomas and St. John, specifically if there is connectivity between inshore and offshore areas, or if there is a barrier between them.

L-R: Sennai, Jess, Tanya, and Dan throw SVP drifters off the stern.


Our stations are positioned at inshore, slope, and offshore locations:
A plankton sample!
Photo credit: LTJG Norton
  • Oceanographic Eulerian data: ADCP, CTD, and XBTs will provide data on the temperature, salinity, and velocities of the water column being sampled. With water velocities we will be able to calculate potential vorticity, which will give us an idea of the ability of the flow to spin. These instruments sample from the surface to the ocean floor! Our Eulerian metrics are important to better understand the physical nature of the inshore and offshore environments where our fish larvae live. 
  • Oceanographic Lagrangian data: SVP and biodegradable drifters will be deployed at each segment on the transects, and will transmit through satellite a time series of speed and direction of the currents. We are deploying the drifters in pairs to be able to compute relative dispersion, which is a measurement of the separation of two surface particles (e.g. larvae) drifting in the ocean. Our Lagrangian metrics are important to better understand the inshore and offshore transport of our fish larvae. 
  • Biological data: Bongo plankton nets will be towed, sampling from the surface to the ocean floor. Fish larvae from these samples will give us an idea as to what species of reef fish are spawning in these areas. These biological metrics are also important to quantify how the nature and transport within inshore and offshore environments affect fish larvae.  
  • Oceanographic data: ADCP, CTD, and XBTs will provide data on the temperature, salinity, and potential vorticity of the water column being sampled. These instruments sample from the surface to the ocean floor!
The CTD is brought back on the ship by ST Stephanie
Photo credit: LTJG Norton

We are very excited to see the results of this study! Upon completion, we will be able to better understand the specific mechanisms which drive interactions between fisheries and the environment in the USVI, and hopefully be able to gauge the effectiveness of current fisheries management strategies, while developing methods for improvement. 

Monday, April 17, 2017

Welcome Aboard NF-17-03!

Welcome back to another exciting year at sea!

NOAA Ship Nancy Foster in Brewers Bay, St. Thomas, USVI
The FORCES Lab at the NOAA Southeast Fisheries Science Center (SEFSC) invites you to join us again as we board the Nancy Foster and experience the wonder of the marine world! The 2017 survey begins in the Caribbean Sea around the stunning islands of the US and British Virgin Islands. We will continue our historical sampling grid from previous years, collecting water and plankton samples.We will also seek out information about the cross-shelf transport of water and planktonic organisms around these islands, and hopefully capture spawning events of commercially valuable reef fish. We are pleased to be sailing with collaborators from NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML), University of Miami (RSMAS), University of the Virgin Islands (UVI), City University of New York (CUNY), University of Puerto Rico-Mayaguez (UPRM), University of South Florida (USF), and USVI Department of Planning and Natural Resources (DPNR). 

Later, the Foster will make her triumphant return to the Gulf of Mexico, going on the hunt for recently spawned patches of larval bluefin tuna! We have many new and exciting sampling schemes planned for this portion of our survey that we look forward to sharing. 

From L-R: Scientists Sarah (UVI), Giovanni (UPRM), Jason (RSMAS), Kristen (UVI),
Jess (CUNY), & Tanya (CUNY) enjoy the view as we set sail from Old San Juan, Puerto Rico

Once again, we'd like to offer a glimpse into what life on a research vessel is like, as well as introduce our incredible collaborators, veteran researchers, and up-and-coming young scientists. We hope you'll join us!

Check out posts from last year's cruise blog!

Friday, June 24, 2016

Another Year Complete!

A post-storm sunset captured from the beach in St. Croix, while the Foster (far left) is docked in port
Another cruise is in the books! We can't believe it's over already! This year's cruise was defined by balancing new sampling techniques and research goals with familiar methods and regions.

We made history by becoming the first federal vessel to dock in Havana, Cuba, since the restoration of diplomatic relations between the two countries, but also returned to the familiar U.S. Virgin Islands, where we sampled for the 7th year. We updated our usual pre-determined sampling plan in order to explore the dynamics of ever-changing mesoscale eddies, yet maintained the integrity of historical sampling sites. We welcomed new faces on board, including Cuban observers, and rekindled relationships with colleagues from years past.

Some final stats for Legs 1, 2, and 3 combined:
Sarah and Alexis rinse down the S25 net
  • CTD casts = 121
  • S10/S25 net tows = 105
  • Bongo tows = 41
  • Neuston tows = 17
  • MOCNESS = 74
  • mini-Bongo tows = 66
  • drifters deployed = 13
  • plankton samples collected = over 500!
  • countries visited = 4 (U.S., Cuba, Mexico, Jamaica)
  • collaborating countries = 7 (U.S., Mexico, Cuba, Japan, Spain, France, Dominican Republic)
  • collaborating institutions = 15
We still have lots of work left to do - unloading the ship, unpacking, cleaning, and repairing all our gear, sorting over 500 plankton samples, identifying larval fish, processing CTD files, running chlorophyll and isotope samples, and more! While we get back to work, check out some of our final images and videos from the last leg of the cruise, and be sure to check back for more next year!

Thanks for reading and sharing in our NF-16-02 adventures!
Leg 3! L-R: Omar, Trika, Sennai, Dan, Alexis, Aras, Mara, Ryan, Alex, Kathryn, Sarah, Adrianne, Angela, LaTreese



Aras patiently filters the mini-Bongo sample through find mesh funnels
Time-lapse: MOCNESS retrieval! 
(Video by Mara Duke)
Time-lapse: S25 tow - this was in very shallow water so you can see the ocean floor!
(Video by Mara Duke)

Adrianne and Angela deploy the CTD while ST Nick directs the winch operator
Ryan takes water samples from the CTD rosette bottles (top), then treats them so the
oxygen concentration can be measured back in the lab (bottom).
Omar (L) rinses the S25 neuston net, while Adrianne and Kathryn hold it steady.
Safety first! Everyone wears hard hats and PFDs, and are tethered to the deck with a safety line.

Day Shift Rules! Mara, Sarah, Sennai, and Alexis take a selfie in their safety gear.

Night Shift makes you crazy! LaTreese, Adrianne, Alex, Omar, Angela, Aars, & Kathryn started work at midnight everyday!

We're done! See you next year!!

Thursday, June 23, 2016

Parrotfish: Coral Reef Vegetarians

A rainbow parrotfish grazing on algae in the Caribbean
Photo source: CFMC, caribbeanfmc.com/fmp_reef_fish.html
Parrotfish are one of the most universally recognized reef fish, with their bright colors and beautiful varieties. If you've ever been snorkeling or SCUBA diving on a reef, you've probably easily spotted parrotfish swimming around, biting off pieces of coral - wait, biting coral? Isn't that bad for it? Aren't corals endangered?

Believe it or not, this "grazing" behavior is actually really good for coral reefs! Parrotfish are herbivores, which means that they eat only plant matter, not other fish, and when you see them biting at the coral, they are actually eating the algae that are growing there. This allows the living part of coral reefs, the polyps, to expand and grow, making the reef bigger and stronger. Without the parrotfish to remove the algae, the polyps would be smothered and eventually die! 

Parrotfish (along with snapper) for
sale in a Caribbean grocery store
Parrotfish are also important sources of food for many Caribbean islands. In the US Virgin Islands, the people of St. Croix especially love fishing and eating parrotfish. Managers must carefully assess the health of the parrotfish stock, due to this fishing demand.

On Leg 3 of our cruise, we are specifically targeting parrotfish larvae for the first time! We want to know where these fish are being spawned, retained, and/or transported, and what differences exist between the St. Thomas/St. John and St. Croix populations.

In the Virgin Islands, we mainly find two genera of parrotfish: Sparisoma and Scarus. Within these genera are more than a dozen different species, like midnight, rainbow, stoplight, queen, and princess parrotfish. Our taxonomists look at the fish's body shape, pigment patterns, and number of fin rays to determine which genus they find. Unfortunately we can't identify all these species at the larval stage with only a microscope (keep reading to find out how we can!). 

Taxonomists carefully collect the sample after a net tow and keep it on ice, then pick through the sample under a microscope, looking for fish larvae - live and on the ship! If we find any parrotfish larvae, they are identified to genus, measured, and then preserved based on the type of future analysis to be conducted. Some larvae are frozen in liquid nitrogen (about -340° F!) so that we can measure their stable carbon and nitrogen isotopes. Other larvae are preserved in refrigerated ethanol to keep their DNA pristine, which can be sequenced to identify the species of each fish, and what population it belongs to!
The two main genera in the Caribbean: Sparisoma (top), ~9mm SL, and Scarus (bottom), ~7mm SL.
Can you spot the differences between the two genera? (HINT: look at the pigments!)
So far, we've found over 300 parrotfish larvae in our samples! We can't wait to get back to the lab to see how many more we caught, and to discover more about the ecology and biology of these beautiful fish!