Showing posts with label hydrography. Show all posts
Showing posts with label hydrography. Show all posts

Sunday, May 6, 2018

NF1802! May the tuna be found today!

Fish eggs
Hello and welcome back to another year of our Nancy Foster Chronicles! This time we are well into Episode 2 of our NOAA RESTORE Project "Bluefin Tuna Ecology." Please check out last year's posts particularly the Return of the tuna!

Top: NOAA Shiptracker map of transit
around Florida
Bottom: Four NOAA Ships meet off the
Dry Tortugas!
Our survey started in Jacksonville, FL, and did a fun U-shaped track around the Florida Peninsula until we reached our study destination: the grand Gulf of Mexico. We even sailed past several other NOAA ships doing work in the area (NOAA Ship party!) to include the NOAA Ships Okeanos Explorer (EX), Oregon II (R2), and the Pisces (PI)! The NOAA Ships fleet support science in multiple fields including oceanographic, fisheries, and atmospheric research.

Join us for another adventure on NOAA Ship Nancy Foster!
It's been a week already, and we are now in the Northern Gulf of Mexico searching for the elusive bluefin tuna larvae. They have been hiding from us, but we are relentless and will keep searching! Our strategy is to target some favorable habitat which is usually in between oceanographic features.

I hope you learn something new during our journey and feel free to ask questions!


Monday, June 19, 2017

We are back home! Last post from the Chief Sci


Scientists and crew sign the NF1703/04 NOAA Corps flag 
First of all thank you for following our research expedition by reading our blog! My name is Estrella Malca and I was the chief scientist for this survey (NF1704) aboard the NOAA Ship Nancy Foster. What does that mean? Each project has a designated person that takes a leading role on the logistical, scientific and reporting aspect of the entire survey. 
One last selfie!
Estrella (Chief Sci) and Samantha (Senior survey tech)

I love to figure out the 'tetris' of things, so this year's cruise has been challenging but fun! Why challenging? Well, usually we have 6 months+ to prepare for our surveys: buying equipment, supplies, assigning scientists and volunteers to participate, and most importantly, securing any relevant permits as well as communicating with the ship's officers and crew about the multiple operational aspects of our project at sea. However, because of our very recent NOAA RESTORE project selected for funding, we had just two months to get a brand new project planned, signed and delivered on time! Without the rest of the science team, there is no way we can come out here and successfully achieve all of our research goals and deliverables!


We had the pleasure to continue to collaborate with several of our partners and also obtained new research connections!

NF1704 Leg 1 scientists
NF1704 Leg 2 scientists

Estrella and Niki deploy our very last satellite tracked drifter

Here is a list of our NF1704 accomplishments!! We were quite busy this  past month as you can see!


ü  500++ Tunas collected, more than 600 specimens individually measured at sea
ü  90 CTD casts: Depths were (300m, 500m, 1500m, and 2500m). The sensors we used on the CTD included temperature, oxygen, salinity, chlorophyll-a and CDOM, conductivity, PAR.
ü  Continuous measurements of currents (ADCP) from Key West to Progreso and to Miami
ü  Continuous measurement of flow through (TSG) from Key West to Progreso and to Miami
ü  7 SVP Drifters were deployed
ü  546 Flow cytometry samples (phytoplankton, bacteria, water column abundance)
ü  72 Elemental Nitrogen (N2)-fixing organism samples
ü  6 casts with PAR (Photosynthetically-Active Radiation) sensor
ü  207 Microbial Abundances and Biomass samples
ü  95 Sediment Trap Flux samples
ü  78 Thorium concentration profiles (dissolved + particulate)
ü  354 Primary Production and Nitrate Uptake
ü  226 Deckboard Incubations for nitrogen utilization rates
ü  120 Shipboard Nitrate Concentrations
ü  57 Deckboard Incubations for δ15N.
ü  130 Nutrient Profiles for NO3- + NO2,-PO43- and isotope analyses (δ15N and δ18O)
ü  95 Mesozooplankton Biomass and Grazing
ü  48 Growth and Grazing Rate Profiles (8 experiments x 6 depths)
ü  279 Phytoplankton Pigments fluorometric Chla,
ü  210 High-performance liquid chromatography  samples
ü  19 ring net tows (100m)
ü  136 net tows (25m): 120 Bongo-90 (240 jars) & 16 Mini-bongo net tows
ü  16 Mesozooplankton and 16 microzooplankton samples
ü  120 Live-sorted plankton samples
ü  95 specimens selected for genetic analysis
*   40+ Open House attendees. Our outreach event welcomed our scientific counterparts, students, professors, and fishermen in Progresso, Mexico

We hope that our projects will fill in a lot of the gaps about the biogeochemical ecosystem in the Gulf of Mexico as it relates to bluefin tuna research for the Western Atlantic stock. Our results will be shared with local and regional stakeholders like NOAA, ICCAT, among others. Soon, we will get started working up the data! Stay tuned and read our posts!


Group selfie, navigating into to the port of Miami

Friday, June 16, 2017

Featured today: LTJG Niki Norton

Today’s post features LTJG Nikita "Niki" Norton, and officially welcomes her to the FORCES Lab family! Niki is the current "Florida Bay Operations Officer," replacing LTJG Aras Zygas.  As a part of the NOAA Commissioned Officer Corps, she operates sampling platforms to facilitate scientific research and provides logistical and administrative support to NOAA’s mission.  She shared with the blog: 
Niki  records the flowmeter data into our logsheets
"For the last three years, I was assigned to the NOAA Ship Bell M. Shimada out of Newport, Oregon, conducting fisheries surveys from Vancouver, Canada all the way down to San Diego, CA.  Along with the responsibilities of being Navigation Officer and Medical Person in Charge, my primary duty was to “drive” the 210’ Fisheries Survey Vessel every day for 200+ days a year

Niki and Loni on the back deck, waiting to deploy the CTD
"Many of the sampling techniques that are routinely performed by research groups on the West Coast to collect plankton are exactly the same as those conducted by the FORCES lab to collect larval fish! 

"This included Bongos, Neustons, MOCNESS, and CTDs on many of the projects.  We performed extensive mid-water stern trawls with a net the size of a football field to catch fish like Pacific hake and sardine. We followed and tagged endangered Resident Killer Whale pods and acoustically monitored beaked whales at 4000m depth.  The remainder of the year, the ship completed Remotely Operated Vehicle (ROV) transects and hydrographic missions in the Farallons and Channel Islands.
Niki and Estrella deploy a satellite tracked drifter
"While many of the operations may be the same, this new job with the Southeast Fisheries Science Center is quite different - as is the scenery!  Rather than the whipping cold wind of the Pacific Northwest, the hot sun in the Caribbean and Gulf of Mexico is one of my favorite parts of the job. With the FORCES Lab, I get to work "on deck" to deploy and recover gear, wash down nets, assist with station planning, and see the plankton and water samples we catch up close! 
NOAA Ship Nancy Foster, Brewers Bay, USVI

"When I am not underway as a scientist, I work in the office to ensure that the lab has everything they need logistically to sail each year by assisting with cruise planning and administrative budgeting.  Now that the first year of sampling has come to a close, I am very excited to see what new projects I will get to be a part of and hope to use my background in reef fish ecology and microbiology to explore new research with the FORCES lab – while getting ready for next year!"
Girl Power! The women behind the science in NF1703!
Top (L-R): Sarah H., Niki, Trika, Sarah P.
Bottom (L-R): Kristen, Vanessa, Jess, Alexis
Niki on the bridge

Wednesday, April 19, 2017

Featured Scientist: Meet Giovanni!


Our annual surveys would not be possible without our wonderful collaborators from around the world. We'll dedicate several future blog posts to highlight these individuals, so that you can learn more about them, their research, and the valuable contributions they make to the survey. Today we feature Giovanni Seijo-Ellis from the University of Puerto Rico - Mayaguez!

Giovanni successfully completes a 1500-meter CTD cast
Hi everyone! My name is Giovanni Seijo-Ellis, I'm a physics masters student at the University of Puerto Rico - Mayaguez, and I'm starting my PhD next fall at the City University of New York's Graduate Center with Dr. David Lindo.

I always knew that I wanted to work on something related to the oceans and as I grew up that interest grew bigger. When I found out as a young teenager that there is a field called physical oceanography, I felt I was born for it. Back in Puerto Rico there are no undergraduate programs in oceanography, so I decided to go into Theoretical Physics, took some advanced oceanography courses and complemented it with atmospheric dynamics courses. I worked for three and a half years for the Puerto Rico Seismic Network doing tsunami simulations and hazard assessments under a National Tsunami Hazard and Mitigation Program grant. 

Ready to launch the XBT!
Then I moved to work with the Caribbean Coastal Ocean Observing System (CariCOOS), the Caribbean Component of NOAA's Integrated Ocean Observing System (IOOS). There I work as an ocean modeler. I basically work with validation and development of ocean models for the Caribbean region in order to have better forecasts of ocean currents and I also prepare some operational products for the CariCOOS webpage users. Besides that, I also do storm surge simulation and mapping with special focus on energy distribution over coral reefs along the northern and eastern part of Puerto Rico. Every now and then I help in CariCOOS field work (which is probably my favorite thing to do), deploying CTDs, and deploying/recovering sea gliders or anything else that comes up. 

One of the homemade biodegradable
CariCOOS drifters
I met Dr. Lindo some months ago and we quickly noticed that we had many research interests in common, so I decided to apply to CUNY's Earth and Environmental Sciences program where we could work together and I could reach my goal of getting a PhD. A couple of weeks after, he called me to see if I was interested in participating on a research cruise...of course I was interested!!!! Our goal is to understand the cross-shelf exchange of waters between St. Thomas and St. Croix. Ocean circulation/currents in the Caribbean is not as easy to understand as one may think. The rapid variation of the bathymetry has a huge effect on ocean currents and waves which makes it a challenge to model accurately and many mesoscale features are also common in this region. So, does water from south of the shelf break cross to the shallower part north of the shelf break? Or does it move along the shelf break? Or do the shallow water cross into the deeper waters? How does this affect larval dispersal in the region? 

These are some of the questions that will help us understand what is happening in this part of the Caribbean and how it affects larval dispersal near the shelf break, especially on the Grammanik and Hind Banks. To accomplish this we will use data obtained from 8 SVP drifters, 4 Bio-degradable drifters (home-made by CariCOOS), 22 XBT launches, and CTD deployments. The use of plankton nets will allow us to collect fish larvae at different water depths and potentially trace back to their place of origin. 

It's away! Positioning the XBT launcher during deployment
So here I am, learning a lot and enjoying every second. So far it has been an amazing experience, the crew and the science team are wonderful. Everyone on the science team is just great, they are really open to hear any suggestions and really care for everyone to learn how to do everything around here. Doesn't matter if you're an undergrad or graduate student, with or without experience in the field, here you are a scientist and will be treated as one. We are all equal, and that makes it really comfortable for such a diverse group to work together successfully. 

While not working, I really enjoy sailing either on a Catalina 30 sailboat, racing on a J30 or J24 or just relaxing near a pond and sail my radio control sailboat. I also do cross-country mountain biking and ride my MTB to work at least once a week. I really hope and look forward to be able to come back on board the Nancy Foster with this amazing team in years to come!

Thanks!


Tuesday, May 24, 2016

Mapping the Unknown

During leg one we took a break from our normal operations to collect some data for our friends and colleagues at the NOAA Office of National Marine Sanctuaries. NOAA is responsible for the conservation and management of over 170,000 square miles of America's most iconic natural and cultural marine resources designated as National Marine Sanctuaries. Sanctuaries seek to preserve the extraordinary scenic beauty, biodiversity, historical connections and economic productivity of our most precious underwater treasures.

Like the United States, every country in the Caribbean has it's own special Marine Protected Areas (MPAs) that they work to conserve for future generations. Cuba is a shining example with 126 Marine Protected Areas and boasting some of the most pristine and healthy coral reefs in the Caribbean.

Map of the newly designated Sister Sanctuaries - Guanahacabibes and Banco de San Antonio in Cuba, and Florida Keys and Flower Garden Banks national marine sanctuaries in the United States.
As you know from previous posts, the Caribbean and Gulf of Mexico are connected by ocean currents. In an effort to conserve our interrelated marine ecosystems, NOAA, the US National Park Service, and Cuba’s Ministry of Science, Technology and Environments signed a memorandum of understanding (MOU) on November 18, 2015 that aims to facilitate cooperation on the science, stewardship and management related to Marine Protected Areas (MPAs). This was a historical agreement between two neighboring countries only recently resuming diplomatic relations. The MOU included a Sister MPA program that recognizes the important connections among the newly designated Sister Sanctuaries - Guanahacabibes and Banco de San Antonio in Cuba, and Florida Keys and Flower Garden Banks national marine sanctuaries in the United States. And the sharing of scientific research and outreach information promoted by this program will hopefully lead to increased protection of our delicate marine ecosystems.

Evolution of bathymetric mapping technology. 
While in the vicinity of Banco de San Antonio, we temporarily pulled in our plankton nets and switched on the multibeam echo sounder to make a bathymetric map of Banco de San Antonio. Bathymetry is essentially "underwater topography" and these maps illustrate the three-dimensional features (relief) of the sea floor. Although this type of work is out of our range of expertise, the crew of the Nancy Foster are experts. Survey Technicians Nick and Samantha have conducted hundreds of miles of mapping and specialize in turning the data collected into beautiful topographic maps. In fact, this type of bottom mapping is the sole mission of many NOAA ships who tirelessly survey the ocean bottom and provide this information to to the general public in the form of nautical charts that allow safe passage to all U.S. ports for both commercial and recreational boaters.

Bathymetric map of  Banco de San Antonio created from Nancy Foster survey data overlaid on a nautical chart, color corresponds to depth (warm=shallow). Charted depths in meters.

Three dimensional closeup of the southeastern portion of Banco de San Antonio. Red bumps likely correspond to coral formations.

The images produced through the Nancy Foster's work will provide information about the habitat and terrain on this very interesting feature that contains high biodiversity, including many species of fish, sponges, and corals. The bathymetric map will direct future research that will use methods such as underwater cameras, SCUBA divers, and possibly ROVs (remotely operated underwater vehicles) to explore in more detail the habitats on Banco de San Antonio.

Mowing the lawn: The Nancy Foster's track can be seen in orange as progress is made during mapping. The speed, direction and spacing of every pass over the bank is crucial to getting the highest quality data and requires an experienced bridge team.
Senior Survey Technician Samantha Martin monitors progress of the Nancy Foster's effort to map Banco de San Antonio.